A young man listens to his father as he describes a vision of the future.

It has been almost half a year since the Temporal Tower incident that occurred on Guild Island. Everything seemed like it would finaly return to normal after a year of excitement. But that all changed when Dan entered the Pokemon world. (A spin off of PMD: Bonded Destinies.)

In one daring move, the Rebel forces destroyed the Fourth Fleet, the most impressive war fleet of the Federation and killed a high ranking Senator. And now the Federation is fragmented. With Rebel's advancing on all sides it is up to a small ship, the Kestrel, to save the Federation from almost certain doom. This is there story.