The whole C/7 train wreck? You just know whose fault that had to be. J/C references and angst, in the context of an attempt to be humorous. Season 7, canon-friendly. Extended ending just added, in which Paris faces his comeuppance. Ultimately completely J/C, as you knew it would be.
Before they leave Voyager, Janeway has a little confession to make. Endgame fixer. J/C
In the last days on Voyager, and back on Earth, Seven goes too far. Completely J/C, in spite of Seven's best efforts. Might be considered a little AU in references to Endgame.
In Persistence of Vision (season 2), Chakotay is unaffected by the alien's hallucinations until he's alone in the turbo lift. What do you suppose he saw? Canon-friendly.
"You had me at 'You are speaking to a member of my crew.'" During the Caretaker episode, Janeway and Chakotay resort to a little-known ritual in an attempt to establish trust. Epilogue now up. AU. J/C
Algorithms, continued. In which the collective squeal from the crew at Janeway's announcement overloads the Doctor's holomatrix and Seven's cortical node, sending both into spontaneous orgasm. Just kidding. J/C
An A/U take on the Chute episode, with Janeway and Chakotay imprisoned instead of Tom and Harry. Expect about a half dozen short chapters. Rated M out of an abundance of caution (it's a prison story, be warned), and apologies to anyone I've unintentionally ripped off. As they say, it's all been done before. J/C, what else? Ch. 6 now up.
Workforce AU, changing one small detail by swapping Chakotay for Jaffen, as the original script is rumored to have had it. The last few scenes would be much the same – they didn't lobotomize her, after all – but far more difficult for both of them, which might change the outcome. I'm sure it's been done before, but hey, it's fanfic!
Another little story from the timeline begun in Observations. On the new Trebus colony, someone gets in over his head.